Europe PMC
Nothing Special   »   [go: up one dir, main page]

Europe PMC requires Javascript to function effectively.

Either your web browser doesn't support Javascript or it is currently turned off. In the latter case, please turn on Javascript support in your web browser and reload this page.

This website requires cookies, and the limited processing of your personal data in order to function. By using the site you are agreeing to this as outlined in our privacy notice and cookie policy.

Genomic resources for wild populations of the house mouse, Mus musculus and its close relative Mus spretus.

Author information

Affiliations

  • 1. Max-Planck Institute for Evolutionary Biology, August-Thienemanstrasse 2, 24306 Plön, Germany.
      Authors
    • Harr B 1
    • Karakoc E 1
    • Neme R 1
    • Teschke M 1
    • Pfeifle C 1
    • Pezer Ž 1
    • Babiker H 1
    • Linnenbrink M 1
    • Montero I 1
    • Scavetta R 1
    • Büntge A 1
    • Künzel S 1
    • Tautz D 1
    (13 authors)
  • 2. Department of Medical Entomology and Vector Control, School of Public Health, Tehran University of Medical Sciences, Tehran 1417613151, Iran.
      Authors
    • Abai MR 2
    (1 author)
  • 3. Laboratorio de Anatomía Animal, Departamento de Biología Animal, Facultad de Ciencias, Universidad de Vigo, 36200 Vigo, Spain.
      Authors
    • Molins MP 3
    (1 author)
  • 4. Friedrich-Loeffler-Institut, Federal Research Institute for Animal Health, Institute for Novel and Emerging Infectious Diseases, Südufer 10, 17493 Greifswald-Insel Riems, Germany.
      Authors
    • Schlegel M 4
    • Ulrich RG 4
    (2 authors)
  • 5. Cologne Center for Genomics (CCG), University of Cologne, Weyertal 115b, 50931 Cologne, Germany.
      Authors
    • Altmüller J 5
    • Franitza M 5
    (2 authors)

ORCIDs linked to this article

Scientific Data, 13 Sep 2016, 3:160075
https://doi.org/10.1038/sdata.2016.75 PMID: 27622383 PMCID: PMC5020872

This article is in the Europe PMC Open access subset. Refer to the copyright information in the article for licensing details.
Free full text in Europe PMC

This is a comment on "Divergence patterns of genic copy number variation in natural populations of the house mouse (Mus musculus domesticus) reveal three conserved genes with major population-specific expansions." Genome Res. 2015 Aug;25(8):1114-24. This is a comment on "Molecular and phenotypic distinction of the very recently evolved insular subspecies Mus musculus helgolandicus ZIMMERMANN, 1953." BMC Evol Biol. 2015;15:160. This is a comment on "Evidence for pervasive adaptive protein evolution in wild mice." PLoS Genet. 2010 Jan;6(1):e1000825.

Abstract 

Wild populations of the house mouse (Mus musculus) represent the raw genetic material for the classical inbred strains in biomedical research and are a major model system for evolutionary biology. We provide whole genome sequencing data of individuals representing natural populations of M. m. domesticus (24 individuals from 3 populations), M. m. helgolandicus (3 individuals), M. m. musculus (22 individuals from 3 populations) and M. spretus (8 individuals from one population). We use a single pipeline to map and call variants for these individuals and also include 10 additional individuals of M. m. castaneus for which genomic data are publically available. In addition, RNAseq data were obtained from 10 tissues of up to eight adult individuals from each of the three M. m. domesticus populations for which genomic data were collected. Data and analyses are presented via tracks viewable in the UCSC or IGV genome browsers. We also provide information on available outbred stocks and instructions on how to keep them in the laboratory.

Free full text 

loading

Full text links 

Read article at publisher's site: https://doi.org/10.1038/sdata.2016.75

Read article for free, from open access legal sources, via Unpaywall: https://www.nature.com/articles/sdata201675.pdfUnpaywall

Citations & impact 

Impact metrics

76
Citations
Jump to Citations

Citations of article over time

Alternative metrics

Altmetric item for https://www.altmetric.com/details/11976948
Altmetric
Discover the attention surrounding your research
https://www.altmetric.com/details/11976948

Smart citations by scite.ai
Smart citations by scite.ai include citation statements extracted from the full text of the citing article. The number of the statements may be higher than the number of citations provided by EuropePMC if one paper cites another multiple times or lower if scite has not yet processed some of the citing articles.
Explore citation contexts and check if this article has been supported or disputed.
https://scite.ai/reports/10.1038/sdata.2016.75

Supporting
Mentioning
Contrasting
10
331
1

Article citations

Go to all (76) article citations

Data 

Data behind the article

This data has been text mined from the article, or deposited into data resources.

BioStudies: supplemental material and supporting data

BioProject (5)

Similar Articles 

To arrive at the top five similar articles we use a word-weighted algorithm to compare words from the Title and Abstract of each citation.